ProteoWizard
ChromatogramListBase.hpp
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1//
2// $Id$
3//
4//
5// Original author: Darren Kessner <darren@proteowizard.org>
6//
7// Copyright 2009 Spielberg Family Center for Applied Proteomics
8// Cedars-Sinai Medical Center, Los Angeles, California 90048
9//
10// Licensed under the Apache License, Version 2.0 (the "License");
11// you may not use this file except in compliance with the License.
12// You may obtain a copy of the License at
13//
14// http://www.apache.org/licenses/LICENSE-2.0
15//
16// Unless required by applicable law or agreed to in writing, software
17// distributed under the License is distributed on an "AS IS" BASIS,
18// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
19// See the License for the specific language governing permissions and
20// limitations under the License.
21//
22
23
24#ifndef _CHROMATOGRAMLISTBASE_HPP_
25#define _CHROMATOGRAMLISTBASE_HPP_
26
27
29#include <stdexcept>
30
31
32namespace pwiz {
33namespace msdata {
34
35
36/// common functionality for base ChromatogramList implementations
38{
39 public:
40
41 /// implementation of ChromatogramList
42 virtual const boost::shared_ptr<const DataProcessing> dataProcessingPtr() const {return dp_;}
43
44 /// set DataProcessing
45 virtual void setDataProcessingPtr(DataProcessingPtr dp) {dp_ = dp;}
46
47 const char* polarityStringForFilter(CVID polarityType) const
48 {
49 return (polarityType == MS_negative_scan) ? "- " : ""; // For backward compatibility, let assumptions about postive ion mode remain
50 }
51
52 protected:
53
55};
56
57
58} // namespace msdata
59} // namespace pwiz
60
61
62#endif // _CHROMATOGRAMLISTBASE_HPP_
63
#define PWIZ_API_DECL
Definition Export.hpp:32
common functionality for base ChromatogramList implementations
virtual const boost::shared_ptr< const DataProcessing > dataProcessingPtr() const
implementation of ChromatogramList
const char * polarityStringForFilter(CVID polarityType) const
virtual void setDataProcessingPtr(DataProcessingPtr dp)
set DataProcessing
Interface for accessing chromatograms, which may be stored in memory or backed by a data file (RAW,...
Definition MSData.hpp:757
MS_negative_scan
negative scan: Polarity of the scan is negative.
Definition cv.hpp:735
boost::shared_ptr< DataProcessing > DataProcessingPtr
Definition MSData.hpp:288