Last updated on 2025-07-14 05:49:03 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| ApplyPolygenicScore | 1 | 12 | |
| bedr | 13 | ||
| BoutrosLab.plotting.general | 13 | ||
| CancerEvolutionVisualization | 13 | ||
| ISOpureR | 13 | ||
| iSubGen | 2 | 11 | |
| OmicsQC | 13 | ||
| OutSeekR | 13 | ||
| SeqKat | 3 | 10 | |
| VennDiagram | 2 | 11 |
Current CRAN status: ERROR: 1, OK: 12
Version: 3.0.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘UserGuide.Rmd’ using rmarkdown
Quitting from UserGuide.Rmd:537-539 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `knitr::include_graphics()`:
! Cannot find the file(s): "../../../../../../../../../../tmp/Rtmp4SMoZi/working_dir/RtmpTUPYR6/2025-07-11_vignette-example-phenotype_pgs-density.png"
---
Backtrace:
▆
1. └─knitr::include_graphics(file.path(temp.dir, phenotype.density.filename))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'UserGuide.Rmd' failed with diagnostics:
Cannot find the file(s): "../../../../../../../../../../tmp/Rtmp4SMoZi/working_dir/RtmpTUPYR6/2025-07-11_vignette-example-phenotype_pgs-density.png"
--- failed re-building ‘UserGuide.Rmd’
SUMMARY: processing the following file failed:
‘UserGuide.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 13
Version: 1.1.3
Check: Rd files
Result: NOTE
checkRd: (-1) ISOpureS1.model_optimize.kappa.kappa_deriv_loglikelihood.Rd:9: Escaped LaTeX specials: \$
checkRd: (-1) ISOpureS1.model_optimize.kappa.kappa_deriv_loglikelihood.Rd:14: Escaped LaTeX specials: \$
checkRd: (-1) ISOpureS1.model_optimize.kappa.kappa_loglikelihood.Rd:11: Escaped LaTeX specials: \$
checkRd: (-1) ISOpureS2.model_optimize.kappa.kappa_deriv_loglikelihood.Rd:11: Escaped LaTeX specials: \$
checkRd: (-1) ISOpureS2.model_optimize.kappa.kappa_loglikelihood.Rd:11: Escaped LaTeX specials: \$
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: NOTE: 2, OK: 11
Version: 1.0.1
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Paul C Boutros <pboutros@mednet.ucla.edu>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Natalie",
family = "Fox",
role = "aut"),
person(given = c("Paul", "C"),
family = "Boutros",
role = "cre",
email = "pboutros@mednet.ucla.edu"))
as necessary.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 3, OK: 10
Version: 0.0.8
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Paul C. Boutros <pboutros@mednet.ucla.edu>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Fouad",
family = "Yousif",
role = "aut"),
person(given = "Xihui",
family = "Lin",
role = "aut"),
person(given = "Fan",
family = "Fan",
role = "aut"),
person(given = "Christopher",
family = "Lalansingh",
role = "aut"),
person(given = "John",
family = "Macdonald",
role = "aut"),
person(given = c("Paul", "C."),
family = "Boutros",
role = "cre",
email = "pboutros@mednet.ucla.edu"))
as necessary.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.0.8
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: 'doMC'
Flavor: r-oldrel-windows-x86_64
Current CRAN status: NOTE: 2, OK: 11
Version: 1.7.3
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Paul Boutros <pboutros@mednet.ucla.edu>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Hanbo",
family = "Chen",
role = "aut"),
person(given = "Paul",
family = "Boutros",
role = "cre",
email = "pboutros@mednet.ucla.edu"))
as necessary.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc