| align.networks | Function to align the adjacency matrices of graphs/networks | 
| ATLEASTK.int | ATLEASTK network integration | 
| lalign.networks | Function to align a list of adjacency matrices of graphs/networks | 
| MAX.int | Maximum (MAX) network integration | 
| MIN.int | Minimum (MIN) network integration | 
| MS.UA.int | "Memory Saving" Unweighted Average (UA) network integration | 
| PUA.int | Per-edge Unweighted Average (PUA) network integration | 
| UA.int | Unweighted Average (UA) network integration | 
| WA.int | Weighted Average (WA) network integration | 
| WAP.int | Weighted Average Per-class (WAP) network integration |