Bayesian Network Meta-Analysis with Missing Participants

Documentation for package ‘rnmamod’ version 0.5.0

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rnmamod-package	rnmamod: Bayesian Network Meta-analysis with Missing Participants
balloon_plot	Enhanced balloon plot
baseline_model	The baseline model for binary outcome
bland_altman_plot	The Bland-Altman plot
comp_clustering	End-user-ready results for comparison dissimilarity and hierarchical clustering (Comparisons' comparability for transitivity evaluation)
covar_contribution_plot	Visualising study percentage contributions against a covariate
data_preparation	Prepare the dataset in the proper format for R2jags
dendro_heatmap	Dendrogram with amalgamated heatmap (Comparisons' comparability for transitivity evaluation)
describe_network	A function to describe the evidence base
distr_characteristics	Visualising the distribution of characteristics (Comparisons' comparability for transitivity evaluation)
forestplot	Comparator-specific forest plot for network meta-analysis
forestplot_juxtapose	Forest plot of juxtaposing several network meta-analysis models
forestplot_metareg	Comparator-specific forest plot for network meta-regression
gower_distance	Weighted Gower's dissimilarity measure (Trials' comparability for transitivity evaluation)
heatmap_missing_dataset	Heatmap of proportion of missing participants in the dataset
heatmap_missing_network	Heatmap of proportion of missing participants in the network
heatmap_robustness	Heatmap of robustness
heterogeneity_param_prior	Determine the prior distribution for the heterogeneity parameter
heter_density_plot	Visualising the density of two prior distributions for the heterogeneity parameter
improved_ume	Detect the frail comparisons in multi-arm trials
inconsistency_variance_prior	Function for the hyper-parameters of the prior distribution of the inconsistency variance (network meta-analysis with random inconsistency effects)
internal_measures_plot	Internal measures for cluster validation (Comparisons' comparability for transitivity evaluation)
intervalplot_panel_ume	A panel of interval plots for the unrelated mean effects model
kld_barplot	Barplot for the Kullback-Leibler divergence measure (missingness scenarios)
kld_inconsistency	Density plots of local inconsistency results and Kullback-Leibler divergence when 'rnmamod', 'netmeta' or 'gemtc' R packages are used
kld_inconsistency_user	Density plots of local inconsistency results and Kullback-Leibler divergence (When dataset is created by the user)
kld_measure	Function for the Kullback-Leibler Divergence of two normally distributed treatment effects for the same pairwise comparison
league_heatmap	League heatmap for estimation
league_heatmap_pred	League heatmap for prediction
league_table_absolute	League table for relative and absolute effects
league_table_absolute_user	League table for relative and absolute effects (user defined)
leverage_plot	Leverage plot
mcmc_diagnostics	Markov Chain Monte Carlo diagnostics
metareg_plot	End-user-ready results for network meta-regression
missingness_param_prior	Define the mean value of the normal distribution of the missingness parameter
miss_characteristics	Visualising missing data in characteristics (Comparisons' comparability for transitivity evaluation)
netplot	Network plot
nma.baker2009	Pharmacological interventions for chronic obstructive pulmonary disease
nma.bottomley2011	Pharmacological interventions for moderately severe scalp psoriasis
nma.dogliotti2014	Oral antithrombotics for stroke episode
nma.fluoride.donegan2018	Topical fluoride interventions for preventing dental caries
nma.liu2013	Antidepressants in Parkinson's disease
nma.malaria.donegan2018	Artemether, artesunate and quinine for severe malaria
nma.schwingshackl2014	Training modalities for patients with type 2 diabetes
nma.stowe2011	Antiparkinsonian interventions for later Parkinson's disease
nodesplit_plot	End-user-ready results for the node-splitting approach
plot_study_dissimilarities	Plot Gower's disimilarity values for each study (Transitivity evaluation)
pma.hetrick2012	Paroxetine versus placebo for depressive disorders
pma.taylor2004	Inositol versus glucose for depressive episode
prepare_model	WinBUGS code for Bayesian pairwise or network meta-analysis and meta-regression
prepare_nodesplit	WinBUGS code for the node-splitting approach
prepare_ume	WinBUGS code for the unrelated mean effects model
rankosucra_plot	Rankograms and SUCRA curves
rnmamod	rnmamod: Bayesian Network Meta-analysis with Missing Participants
robustness_index	Robustness index
robustness_index_user	Robustness index when 'metafor' or 'netmeta' are used
run_metareg	Perform Bayesian pairwise or network meta-regression
run_model	Perform Bayesian pairwise or network meta-analysis
run_nodesplit	Perform the node-splitting approach
run_sensitivity	Perform sensitivity analysis for missing participant outcome data
run_series_meta	Perform a series of Bayesian pairwise meta-analyses
run_ume	Perform the unrelated mean effects model
scatterplots_dev	Deviance scatterplots
scatterplot_sucra	Scatterplot of SUCRA values
series_meta_plot	End-user-ready results for a series of pairwise meta-analyses
study_perc_contrib	Calculate study percentage contributions to summary treatment effects or regression coefficients
table_tau2_prior	Predictive distributions for the between-study variance in a future meta-analysis on odds ratio or standardised mean difference
taylor_continuous	Pattern-mixture model with Taylor series for continuous outcome
taylor_imor	Pattern-mixture model with Taylor series for a binary outcome
ume_plot	End-user-ready results for the unrelated mean effects model
unrelated_effects_plot	End-user-ready results for unrelated trial effects model