Automated Classification of Mass Spectra

Documentation for package ‘MSclassifR’ version 0.4.0

calculate_distance	Function calculating the distance between two vectors.
CitrobacterRKImetadata	Metadata of mass spectra corresponding to the bacterial species _Citrobacter_ sp. from The Robert Koch-Institute (RKI) database of microbial MALDI-TOF mass spectra
CitrobacterRKIspectra	Mass spectra corresponding to the bacterial species _Citrobacter_ sp. from The Robert Koch-Institute (RKI) database of microbial MALDI-TOF mass spectra
d_left_join	Function joining two tables based not on exact matches
fast_find_neighbors	Function finding k Nearest Neighbors for each row of a matrix
fast_generate_synthetic	Function generating synthetic examples using SMOTE
LogReg	Estimation of a multinomial regression to predict the category to which a mass spectrum belongs
MSclassifR	Automated classification of mass spectra
PeakDetection	Detection of peaks in 'MassSpectrum' objects.
PlotSpectra	Plot mass spectra with detected peaks
PredictFastClass	Prediction of the category to which a mass spectrum belongs using linear regressions of mass spectra.
PredictLogReg	Prediction of the category to which a mass spectrum belongs from a multinomial logistic regression model
SelectionVar	Variable selection using random forests, logistic regression methods or sparse partial least squares discriminant analysis (sPLS-DA).
SelectionVarStat	Variable selection using multiple statistical tests.
SignalProcessing	Function performing post acquisition signal processing
smote_classif	SMOTE for Classification Problems