Transition Network Analysis (TNA)

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Documentation for package ‘tna’ version 0.5.0

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A B C D E F G H I M P R S T

tna-package The 'tna' Package.

-- A --

as.igraph.group_tna Coerce a Specific Group from a 'group_tna' Object into an 'igraph' Object.
as.igraph.matrix Coerce a Weight Matrix into an 'igraph' Object.
as.igraph.tna Coerce a 'tna' Object into an 'igraph' Object.
atna Build a Transition Network Analysis Model

-- B --

betweenness_network Build and Visualize a Network with Edge Betweenness
betweenness_network.tna Build and Visualize a Network with Edge Betweenness
bootstrap Bootstrap Transition Networks from Sequence Data
bootstrap.group_tna Bootstrap Transition Networks from Sequence Data
bootstrap.tna Bootstrap Transition Networks from Sequence Data
build_model Build a Transition Network Analysis Model
build_model.data.frame Build a Transition Network Analysis Model
build_model.default Build a Transition Network Analysis Model
build_model.matrix Build a Transition Network Analysis Model
build_model.stslist Build a Transition Network Analysis Model
build_model.tna_data Build a Transition Network Analysis Model

-- C --

centralities Calculate Centrality Measures for a Transition Matrix
centralities.group_tna Calculate Centrality Measures for a Transition Matrix
centralities.matrix Calculate Centrality Measures for a Transition Matrix
centralities.tna Calculate Centrality Measures for a Transition Matrix
cliques Identify Cliques in a Transition Network
cliques.group_tna Identify Cliques in a Transition Network
cliques.tna Identify Cliques in a Transition Network
communities Community Detection for Transition Networks
communities.group_tna Community Detection for Transition Networks
communities.tna Community Detection for Transition Networks
compare Compare Two Matrices or TNA Models with Comprehensive Metrics
compare.group_tna Compare TNA Clusters with Comprehensive Metrics
compare.matrix Compare Two Matrices or TNA Models with Comprehensive Metrics
compare.tna Compare Two Matrices or TNA Models with Comprehensive Metrics
ctna Build a Transition Network Analysis Model

-- D --

deprune Restore a Pruned Transition Network Analysis Model
deprune.group_tna Restore a Pruned Transition Network Analysis Model
deprune.tna Restore a Pruned Transition Network Analysis Model

-- E --

engagement Example Data on Student Engagement
engagement_mmm Example Mixed Markov Model Fitted to the 'engagement' Data
estimate_centrality_stability Estimate Centrality Stability
estimate_centrality_stability.group_tna Estimate Centrality Stability
estimate_centrality_stability.tna Estimate Centrality Stability
estimate_cs Estimate Centrality Stability
estimate_cs.group_tna Estimate Centrality Stability
estimate_cs.tna Estimate Centrality Stability

-- F --

ftna Build a Transition Network Analysis Model

-- G --

group_atna Build a Grouped Transition Network Analysis Model
group_ctna Build a Grouped Transition Network Analysis Model
group_ftna Build a Grouped Transition Network Analysis Model
group_model Build a Grouped Transition Network Analysis Model
group_model.default Build a Grouped Transition Network Analysis Model
group_model.mhmm Build a Grouped Transition Network Analysis Model
group_regulation Example Wide Data on Group Regulation
group_regulation_long Example Long Data on Group Regulation
group_tna Build a Grouped Transition Network Analysis Model

-- H --

hist.group_tna Plot a Histogram of Edge Weights for a 'group_tna' Object.
hist.tna Plot a Histogram of Edge Weights in the Network

-- I --

import_data Import Wide Format Sequence Data as Long Format Sequence Data

-- M --

mmm_stats Retrieve Statistics from a Mixture Markov Model (MMM)

-- P --

permutation_test Compare Two Networks from Sequence Data using a Permutation Test
permutation_test.group_tna Compare Networks using a Permutation Test
permutation_test.tna Compare Two Networks from Sequence Data using a Permutation Test
plot.group_tna Plot a Grouped Transition Network Analysis Model
plot.group_tna_bootstrap Plot a Bootstrapped Grouped Transition Network Analysis Model
plot.group_tna_centralities Plot Centrality Measures
plot.group_tna_cliques Plot Found Cliques
plot.group_tna_communities Plot Detected Communities
plot.group_tna_permutation Plot Permutation Test Results
plot.group_tna_stability Plot Centrality Stability Results
plot.tna Plot a Transition Network Analysis Model
plot.tna_bootstrap Plot a Bootstrapped Transition Network Analysis Model
plot.tna_centralities Plot Centrality Measures
plot.tna_cliques Plot Cliques of a TNA Network
plot.tna_communities Plot Communities
plot.tna_comparison Plot the Comparison of Two TNA Models or Matrices
plot.tna_permutation Plot the Significant Differences from a Permutation Test
plot.tna_stability Plot Centrality Stability Results
plot_compare Plot the Difference Network Between Two Models
plot_compare.group_tna Plot the Difference Network Between Two Clusters
plot_compare.tna Plot the Difference Network Between Two Models
plot_frequencies Plot the Frequency Distribution of States
plot_frequencies.group_tna Plot the Frequency Distribution of States
plot_frequencies.tna Plot the Frequency Distribution of States
plot_mosaic Create a Mosaic Plot of Transitions or Events
plot_mosaic.group_tna Plot State Frequencies as a Mosaic Between Two Groups
plot_mosaic.tna Create a Mosaic Plot of Transitions or Events
plot_mosaic.tna_data Plot State Frequencies as a Mosaic Between Two Groups
prepare_data Compute User Sessions from Event Data
print.group_tna Print a 'group_tna' Object
print.group_tna_bootstrap Print 'group_tna' Bootstrap Results
print.group_tna_centralities Print Centrality Measures
print.group_tna_cliques Print Found Cliques
print.group_tna_communities Print Detected Communities
print.group_tna_permutation Print Permutation Test Results
print.group_tna_stability Print Centrality Stability Results
print.summary.group_tna Print a Summary of a Grouped Transition Network Analysis Model
print.summary.group_tna_bootstrap Print a Bootstrap Summary for a Grouped Transition Network Model
print.summary.tna Print a TNA Summary
print.summary.tna_bootstrap Print a Bootstrap Summary
print.tna Print a 'tna' Object
print.tna_bootstrap Print Bootstrap Results
print.tna_centralities Print Centrality Measures
print.tna_cliques Print Found Cliques of a TNA Network
print.tna_communities Print Detected Communities
print.tna_comparison Print Comparison Results
print.tna_data Print a TNA Data Object
print.tna_permutation Print Permutation Test Results
print.tna_stability Print Centrality Stability Results
prune Prune a Transition Network based on Transition Probabilities
prune.group_tna Prune a Transition Network based on Transition Probabilities
prune.tna Prune a Transition Network based on Transition Probabilities
pruning_details Print Detailed Information on the Pruning Results
pruning_details.group_tna Print Detailed Information on the Pruning Results
pruning_details.tna Print Detailed Information on the Pruning Results

-- R --

rename_groups Rename Clusters
reprune Restore Previous Pruning of a Transition Network Analysis Model
reprune.group_tna Restore Previous Pruning of a Transition Network Analysis Model
reprune.tna Restore a Pruned Transition Network Analysis Model

-- S --

simulate.tna Simulate Data from a Transition Network Analysis Model
summary.group_tna Calculate Summary of Network Metrics for a grouped Transition Network
summary.group_tna_bootstrap Summarize Bootstrap Results for a Grouped Transition Network
summary.tna Calculate Summary of Network Metrics for a Transition Network
summary.tna_bootstrap Summarize Bootstrap Results

-- T --

tna Build a Transition Network Analysis Model