Make 'PICRUSt2' Output Analysis and Visualization Easier

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Documentation for package ‘ggpicrust2’ version 2.1.2

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

compare_daa_results	Compare the Consistency of Statistically Significant Features
compare_gsea_daa	Compare GSEA and DAA results
compare_metagenome_results	Compare Metagenome Results
daa_annotated_results_df	Differentially Abundant Analysis Results with Annotation
daa_results_df	DAA Results Dataset
ggpicrust2	This function integrates pathway name/description annotations, ten of the most advanced differential abundance (DA) methods, and visualization of DA results.
ggpicrust2_extended	Integrated analysis with ggpicrust2 including GSEA
gsea_pathway_annotation	Annotate GSEA results with pathway information
import_MicrobiomeAnalyst_daa_results	Import Differential Abundance Analysis (DAA) results from MicrobiomeAnalyst
kegg_abundance	KEGG Abundance Dataset
ko2kegg_abundance	Convert KO abundance in picrust2 export files to KEGG pathway abundance
ko_abundance	KO Abundance Dataset
metacyc_abundance	MetaCyc Abundance Dataset
metadata	Metadata for ggpicrust2 Demonstration
pathway_annotation	Pathway information annotation of "EC", "KO", "MetaCyc" pathway
pathway_daa	Differential Abundance Analysis for Predicted Functional Pathways
pathway_errorbar	The function pathway_errorbar() is used to visualize the results of functional pathway differential abundance analysis as error bar plots.
pathway_gsea	Gene Set Enrichment Analysis for PICRUSt2 output
pathway_heatmap	Create pathway heatmap
pathway_pca	Perform Principal Component Analysis (PCA) on functional pathway abundance data
safe_extract	Safely Extract Elements from a List
visualize_gsea	Visualize GSEA results