Clinical Publication

Documentation for package ‘clinpubr’ version 1.0.1

Help Pages

add_lists	Adding lists element-wise
answer_check	Check answers of multiple choice questions
baseline_table	Create a baseline table for a dataset.
break_at	Generate breaks for histogram
calculate_index	Calculate index based on conditions
check_nonnum	Check elements that are not numeric
classif_model_compare	Performance comparison of classification models
combine_files	combine multiple data files into a single data frame
cut_by	Convert Numeric to Factor
df_view_nonnum	Show non-numeric elements in a data frame
emp_colors	default color palette for 'clinpubr' plots
extract_num	Extract numbers from string.
fill_with_last	Fill NA values with the last valid value
filter_rcs_predictors	Filter predictors for RCS
first_mode	Calculate the first mode
format_pval	Format p-value for publication
formula_add_covs	Add covariates to a formula
get_samples	Generate a sample of values from a vector and collapse them.
get_valid	Get one valid value from vector.
get_valid_subset	Get the subset that satisfies the missing rate condition.
get_var_types	Get variable types for baseline table
importance_plot	Importance plot
interaction_plot	Plot interactions
interaction_p_value	Calculate interaction p-value
interaction_scan	Scan for interactions between variables
mad_outlier	Mark possible outliers with MAD.
max_missing_rates	Get the maximum missing rate of rows and columns.
merge_ordered_vectors	Merging vectors while maintaining order
na2false	Replace NA values with FALSE
qq_show	QQ plot
rcs_plot	Plot restricted cubic spline
regression_basic_results	Basic results of logistic or Cox regression.
regression_fit	Obtain regression results
regression_forest	Forest plot of regression results
regression_scan	Scan for significant regression predictors
replace_elements	Replacing elements in a vector
split_multichoice	Split multi-choice data into columns
str_match_replace	Match string and replace with corresponding value
subgroup_forest	Create subgroup forest plot.
subject_view	Get an overview of different subjects in data.
to_date	Convert numerical or character date to date.
unit_standardize	Standardize units of numeric data.
unit_view	Generate a table of conflicting units.
unmake_names	Unmake names
value_initial_cleaning	Preliminarily cleaning numerical string vectors
vec2code	Generate code from string vector Generate the code that can be used to generate the string vector.